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Oh, wow! It was the ST:TNG episode Second Chances (linked in that article) that got me into thinking about it, and it's really trippy to read that somebody else came up exactly the same thought experiment with a human-replicator, too, and came to the same conclusion that I did: Both the original and the duplicate would have exactly the same memories of entering the replicator, so both would have the same continuous experience of the subjective "I". But if only one existed before replication, where did the second consciousness come from?
After I heard the Radiolab episode, "Loops,", I realized that the only way to resolve the paradox is to figure that our consciousness is re-created more-or-less continuously from our memories. That episode covered the case of a woman who experienced Transient Global Amnesia, which sent her into a loop of about 90 seconds of essentially the same conversation over and over, for hours. There's a famous video of it. That fits with the evidence, from neuroscience, that our consciousness drops out briefly every minute or so while our brains attend to sensory input from the environment.
The COVID-19 pandemic really brought this home to me in a visceral way. In the early weeks, when the CDC was warning about surface contamination, and how I should not touch the mask I had to wear at work under any circumstance, my nose would invariably start to itch. I would tough it out, exercise will power not to scratch the itch, and it would eventually go away. Soon, I realized that I never once got to feel the moment of relief when the itch faded. Always, I would simply notice that it had been gone for some unknown amount of time. It went away with one of those consciousness resets.
So, yeah, like the other folks say, we don't have a continuous conscious experience. The old "I" passes away within seconds, to be replaced by a new "I" with my memories, in a never-ending process of renewal. Think about that next time you walk into another room and forget why you're there.