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I would clone the second disk to the new disk (with gparted for instance) an then resize the partion to fit the disk. This way it would be a simple disk swap without needing to do anything else.
PS: I think simply copying the files will go wrong with the hard links.
My data SSD is 2TB and my new HDD is 12TB. I guess cloning will make 2TB partition on new HDD and then I have to extend it to 12TB? Did I understand that correctly? Do I need to use live OS or can I do it on running Debian OS? Do I have to change paths in my docker-compose after that? Please check another comment how I defined volumes, there might be a better way.
Sorry I wanted bit to fast. Clonezilla will clone disk including huid (which can mess things up is you keep both in the pc). But then you can boot clonezilla, clone disk (has a flag -k1 for resizing partitions), remove the old disk, and should work without changing anything else. If you want to change the settings anyway, there are more options like DD. For clonezilla instructions, see https://clonezilla.org/fine-print-live-doc.php?path=./clonezilla-live/doc/03_Disk_to_disk_clone/00-prepare-clonezilla-live.doc#00-prepare-clonezilla-live.doc
Mate this was awesome recommendation. Using -k1 made exact same disk but with more storage 😉
It took 1h55m for 1.5 TB od files from 2TB disk to new 12TB
Nothing changed, I just replaced disk and viola server is up and running
Awesome thank you