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I used the desktop drivers as well (on arch from the extra repo) for my headless arch server.
Regarding nvidia container toolkit once it was installed I added this to my Jellyfin docker compose:
Then to confirm, I did
docker exec -it jellyfin nvidia-smi
Which responded with my GPU. Note that (for me) the "processes" part of nvidia-smi comes up blank, even when Jellyfin is using it. I can tell it is working though from jellyfin logs and when it is not using it, instead of being blank it says "no processes"Edit for formatting and to add that I believe I also had to add an environment variable to jellyfin (I am using lsio's version)